PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_F18648C49.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 192aa    MW: 21007.8 Da    PI: 8.7448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_F18648C49.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-174291355
                    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++GVr ++ +g+++AeIrd + ng   r++lg+f+++e Aa a+++a+ +++g
  Traes_4AL_F18648C49.1 42 FRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDSPETAALAYDQAAFAIRG 91
                           8*******.**********44465..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.6E-3341105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2841100IPR001471AP2/ERF domain
PROSITE profilePS5103222.2474199IPR001471AP2/ERF domain
PfamPF008476.0E-124291IPR001471AP2/ERF domain
CDDcd000181.09E-2442101No hitNo description
SuperFamilySSF541711.83E-2142100IPR016177DNA-binding domain
PRINTSPR003672.3E-94253IPR001471AP2/ERF domain
PRINTSPR003672.3E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MLLLHMLSQH QQHTHKALAA PVKLEAADGE EAGHQVSDGR AFRGVRKRPW GKYAAEIRDS  60
TRNGVRVWLG TFDSPETAAL AYDQAAFAIR GGAAVLNFPA DHVRRSLEGV ADDVCGRAHS  120
VSPVLALKRR HSMRSRKATA AGRKVKAATR GAQPEGMVME LEDLGAEYLE QLLGASEDTA  180
TMDSWCWSHH FI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-25421021575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0922637e-46AC092263.7 Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence.
GenBankAK1093907e-46AK109390.2 Oryza sativa Japonica Group cDNA clone:006-211-G07, full insert sequence.
GenBankAP0149597e-46AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126117e-46CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158423.16e-88ethylene-responsive transcription factor 1B-like
TrEMBLA0A446RBU31e-138A0A446RBU3_TRITD; Uncharacterized protein
STRINGTraes_4AL_F18648C49.11e-139(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.18e-50ethylene response factor 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]