PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AL_F1DC044FA.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 330aa MW: 36147.3 Da PI: 6.1311

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_F1DC044FA.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.3	4.8e-19	39	119	2	85
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 Wt e+++Liea+++++e+ + l ++W++v +++++ g++rs++qC+++w+nl ++ykk+++ e ++ + p + ++ Traes_4AL_F1DC044FA.1 39 WTLPETMLLIEAKKRVHEERHPADLGLARWRWVEDYCWRAGCRRSQNQCNDRWDNLMRDYKKVRAYEHAGAGA---EAPSYWEM 119 *****************************************************************99987422...24555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.991	31	95	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.5E-5	33	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.08E-6	34	97	IPR009057	Homeodomain-like
Pfam	PF13837	2.0E-14	37	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MDTKGSGAHR EGEETGNTMA GNVGAGAMTV AREYRRGNWT LPETMLLIEA KKRVHEERHP 60 ADLGLARWRW VEDYCWRAGC RRSQNQCNDR WDNLMRDYKK VRAYEHAGAG AEAPSYWEMA 120 RAERKARYLP SNLLREIYEA MGEIVERRMS FAGAGGPFLG APPPPPMVSS GLVGVPMQAS 180 PLAQVQPRPL DQEETRGSSE SSPERKRLRL SLDGQPGSST PASAAGHDDR HQEPQGDDRE 240 SSDDTEEYDE LSGAIGQCAA ILSGALESRE AAEERRHREV MAVEERRSVA KQARREAGEQ 300 CMAGLAAAVG QLAGSMLALA AKHEGPAAPK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU962106	3e-92	EU962106.1 Zea mays clone 240234 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200121.1	0.0	trihelix transcription factor ASR3-like
TrEMBL	A0A3B6HX61	0.0	A0A3B6HX61_WHEAT; Uncharacterized protein
TrEMBL	A0A446RAS5	0.0	A0A446RAS5_TRITD; Uncharacterized protein
STRING	Traes_4AL_F1DC044FA.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3294	35	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	1e-44	Trihelix family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]