PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_02B607421.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 340aa    MW: 38747.3 Da    PI: 4.9238
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_02B607421.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind93.62.2e-291859102
                            HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
           HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                            +++d+++++++sw++ gnsfv++d + f++++L+++Fkh+nf+SF+RQLn+YgF+kv+ ++         we++++ F +g+k+ll+ 
  Traes_4AS_02B607421.1   1 MVSDAATDKVMSWTDAGNSFVIWDAHAFERDLLSRHFKHRNFSSFIRQLNTYGFRKVDPDR---------WEWANEGFLRGQKHLLKI 79 
                            8999******************************************************999.........****************** PP

                            XXXXXX CS
           HSF_DNA-bind  97 ikrkks 102
                            ikrkk+
  Traes_4AS_02B607421.1  80 IKRKKR 85 
                            ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.8E-41183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-30183IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.49E-28183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.5E-26183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-83244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-84557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVSDAATDKV MSWTDAGNSF VIWDAHAFER DLLSRHFKHR NFSSFIRQLN TYGFRKVDPD  60
RWEWANEGFL RGQKHLLKII KRKKRPQEAG RELEKAPVKA APGTENIEIG RYGGLVKEVE  120
TLKRDKSLLM QQLVDLRHYQ QSSNLEVQSL IQRLQVMEQN QKQMMALLSI VVQNPSLLNQ  180
LVQQQQQQRR ANWYEDGNKK RRFPALEQGP VTDYGTSGAG TEIIQYRPPA PETSSPVIPD  240
EAFLSATTQP ISSPALNMPM DIDTQTTSDN LNTQGSSGDI FADMPALPDF DDMHLWFGED  300
GEPTLTIQDY DESPQSEQDC QMEAQHNYNN PQHADVITEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-1918336129Heat shock factor protein 1
5d5v_B5e-1918336129Heat shock factor protein 1
5d5v_D5e-1918336129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3629970.0AK362997.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2012C04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148069.10.0heat stress transcription factor A-9-like
RefseqXP_020148070.10.0heat stress transcription factor A-9-like
SwissprotQ10PR41e-159HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLA0A3B6HQR50.0A0A3B6HQR5_WHEAT; Uncharacterized protein
STRINGTraes_4AS_02B607421.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.15e-56heat shock transcription factor A1D
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]