PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_0D75149B5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 320aa    MW: 33395.2 Da    PI: 6.8505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_0D75149B5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-202776255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+GVr++  +g+WvAeIr+p   +kr+r++lg+f taeeAa a+++a+++l+g
  Traes_4AS_0D75149B5.1 27 EYRGVRQRT-WGKWVAEIREP---NKRARIWLGSFATAEEAALAYDEAARRLYG 76
                           69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.63E-282686No hitNo description
PROSITE profilePS5103222.552784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-302785IPR001471AP2/ERF domain
PfamPF008475.5E-142776IPR001471AP2/ERF domain
SMARTSM003803.2E-352790IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-212785IPR016177DNA-binding domain
PRINTSPR003672.8E-102839IPR001471AP2/ERF domain
PRINTSPR003672.8E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MESYVRKRSW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRA RIWLGSFATA  60
EEAALAYDEA ARRLYGPDAF LNLPHLRAAA GATAQQRMIR WLPAAAAGVA SGGARGHAAV  120
PACGLLNLNA QHNVHVIHQR LQELKSSSSS PAKPPQQQSR RTPPPPPPPP AASSPSSTVT  180
TGAMPPSASC FQSQLDHSMA MTAAAESAPP CDGFGGGRPQ LDLKEFLQQI GVLGEDDGGA  240
AGKHHGPQGV GEDDGEVADA FGFGGGNSNA AEFDWDALAA DMSDIAAGGH GGGGALGVNG  300
AFHMDDLDQF GCVPIPVWDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-172891669ATERF1
3gcc_A1e-172891669ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0904841e-143AC090484.4 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence.
GenBankAP0149591e-143AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179095.10.0dehydration-responsive element-binding protein 2E-like
SwissprotQ10R181e-118DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A3B6HM810.0A0A3B6HM81_WHEAT; Uncharacterized protein
TrEMBLA0A446QL680.0A0A446QL68_TRITD; Uncharacterized protein
STRINGTraes_4AS_0D75149B5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-46ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]