PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_0DA136E0E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 135aa    MW: 14952.7 Da    PI: 8.8976
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_0DA136E0E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.49.4e-165561159
                           EEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY 11 GqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                           GqKe+++s++prsYYrCt++   gC++k++ + +++ p   +itY geH+++
  Traes_4AS_0DA136E0E.1  5 GQKEIQNSTHPRSYYRCTHKsdqGCNAKRQAQICETHPIKYDITYYGEHTCK 56
                           9******************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081115.078158IPR003657WRKY domain
SMARTSM007741.4E-19257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-16558IPR003657WRKY domain
SuperFamilySSF1182902.09E-16558IPR003657WRKY domain
PfamPF031068.3E-16556IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MAEDGQKEIQ NSTHPRSYYR CTHKSDQGCN AKRQAQICET HPIKYDITYY GEHTCKPPSN  60
TPMIIVAASD DRAENLVSFA PTFPHLAPGS APALTTCSAP RPIHSCRRTS SPPSWDRPGG  120
RPRWWGRCRT TAGVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-185561869OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8273981e-126KR827398.1 Triticum aestivum WRKY47 transcriptional factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185911.12e-54probable WRKY transcription factor 64
TrEMBLA0A446QVS44e-96A0A446QVS4_TRITD; Uncharacterized protein
STRINGTraes_4AS_0DA136E0E.17e-97(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-17WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]