PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_18663793B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 243aa    MW: 25098.8 Da    PI: 5.062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_18663793B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76e-184594255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                           +ykGVr ++ +g+Wv+eIr p     +  +r++lg++ t+e Aa+a++aa ++l+g
  Traes_4AS_18663793B.1 45 QYKGVRMRS-WGSWVSEIRAP-----HqkRRIWLGSYATPEAAARAYDAALLCLKG 94
                           69****998.**********7.....335************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-2944104IPR001471AP2/ERF domain
PfamPF008474.3E-114594IPR001471AP2/ERF domain
PROSITE profilePS5103222.10245102IPR001471AP2/ERF domain
CDDcd000188.20E-1845101No hitNo description
SuperFamilySSF541711.05E-1945103IPR016177DNA-binding domain
SMARTSM003803.2E-3545108IPR001471AP2/ERF domain
PRINTSPR003675.5E-84657IPR001471AP2/ERF domain
PRINTSPR003675.5E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVKNHPGGGT SRCEAAAAMA ESGGGGGTAA LCGGGSRQPA MAVRQYKGVR MRSWGSWVSE  60
IRAPHQKRRI WLGSYATPEA AARAYDAALL CLKGSDAVLN FPSSSSASPS SPHSLPSPAD  120
QHADDLSPRS IQRAAAAAAA AFEATRIVAG VVDDSCSSSA EATTPTSVSV STLGSADVQE  180
HATSSMASAG SPVGDHDELW TELDAFASPK LMDLIAAGHA TPFSSTWEEP EEDGEMMRLW  240
SFC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3567330.0AK356733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1039C08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189509.11e-130ethylene-responsive transcription factor ERF014-like
TrEMBLA0A3B6HPM91e-174A0A3B6HPM9_WHEAT; Uncharacterized protein
TrEMBLA0A446QRC61e-174A0A446QRC6_TRITD; Uncharacterized protein
STRINGTraes_4AS_18663793B.11e-175(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-21ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]