PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_1E79E1072.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 272aa    MW: 29189 Da    PI: 9.2907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_1E79E1072.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51e-20102152256
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                             y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ta+eAa a++aa+ +l+ge
  Traes_4AS_1E79E1072.1 102 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTADEAALAYDAAAFRLRGE 152
                            59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.28E-20101161No hitNo description
SMARTSM003804.3E-38102165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-32102160IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-23102160IPR016177DNA-binding domain
PROSITE profilePS5103223.538102159IPR001471AP2/ERF domain
PRINTSPR003675.6E-11103114IPR001471AP2/ERF domain
PfamPF008478.7E-15103152IPR001471AP2/ERF domain
PRINTSPR003675.6E-11125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
ARSSGGDVPH GGRQRPGNAR VRSADGAGRG ADHLLLLPLP RRGAERRPAS WRQLPHSRAN  60
PPAPVAAPPR APGAGXXXMA VAGQPMKRHG VAALPAQPAA KLYRGVRQRH WGKWVAEIRL  120
PRNRTRLWLG TFDTADEAAL AYDAAAFRLR GESARLNFPE LRRGGEHHGG PPLDAAIDAK  180
LRSICHGEDL PQSQSNATPA PTPTLTPSSF PDVKSEPGCS VSESSSSADG EVSSCSDVVP  240
EMQLLDFSEA PWDESLLRKY PSLEIDWDAI LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19101166470ATERF1
3gcc_A1e-19101166470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2865590.0DQ286559.1 Triticum aestivum dehydration responsive element binding protein (DREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169042.11e-106ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E45e-52RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A3B6HNG71e-110A0A3B6HNG7_WHEAT; Dehydration responsive element binding protein
TrEMBLA0A446QML21e-110A0A446QML2_TRITD; Uncharacterized protein
TrEMBLA0MAU31e-110A0MAU3_WHEAT; Dehydration responsive element binding protein
STRINGTraes_4AS_1E79E1072.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.19e-41related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  5. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  6. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]