PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AS_2603E68AF.3

Common Name

NFYA-A3

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YA

Protein Properties

Length: 243aa MW: 26503.6 Da PI: 9.7031

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AS_2603E68AF.3	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	107.4	1.1e-33	136	192	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl ksrkpylheSRh+hA++R+Rg+gGrF Traes_4AS_2603E68AF.3 136 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHQHAMKRARGTGGRF 192 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-38	134	195	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	39.328	135	195	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.0E-29	137	192	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-25	138	160	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	140	160	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.8E-25	169	192	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MRRKQNMQEN GTIMIQFGQQ VPNCESSASD SPQEVSGMSE GSFNEQNDQS GNRDGYTKSS 60 DEGKMMSALS LGNSEMAYTP PKPDRTHPFA ISYPYADPYY GGAVAAYGAH AIMHPQMVGM 120 VPSSRVPLPI EPAAAEEPIY VNAKQYHAIL RRRQLRAKLE AENKLVKSRK PYLHESRHQH 180 AMKRARGTGG RFLNAKEKSE ASGGGNASAR SGHAGVPPDG GMFSKHDHTL PSGDFHYRAR 240 GGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-24	136	199	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM078750	0.0	KM078750.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-A3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179090.1	1e-174	nuclear transcription factor Y subunit A-7-like
Swissprot	Q945M9	2e-40	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A0A7LUQ4	1e-180	A0A0A7LUQ4_WHEAT; CCAAT-binding transcription factor B
TrEMBL	A0A446QKD6	1e-178	A0A446QKD6_TRITD; Uncharacterized protein
STRING	Traes_4AS_2603E68AF.3	1e-180	(Triticum aestivum)
STRING	TRIUR3_08409-P1	1e-178	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1373	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	2e-31	nuclear factor Y, subunit A5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qu B, et al. A wheat CCAAT box-binding transcription factor increases the grain yield of wheat with less fertilizer input. Plant Physiol., 2015. 167(2): p. 411-23 [PMID:25489021] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]