PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_6486B493A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 684aa    MW: 73659.8 Da    PI: 6.66
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_6486B493A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.2e-28203256155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Traes_4AS_6486B493A.1 203 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 256
                            79*******************.********************************8 PP
2Response_reg76.78.5e-26191271109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl+vdD+++ + +l+++l + +y +++++++++ al++l+e++  +D+i+ D+ mp+m+G++ll+     e++lp+i+++a +  +++
  Traes_4AS_6486B493A.1  19 VLVVDDDQTCLAVLKRMLVQCRY-DATTCSQATRALAMLRENRgaFDVIISDVHMPDMNGFRLLELVGL-EMDLPVIMMSADSRTDLV 104
                            89*********************.*****************9999*******************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + +k Ga d+l Kp+ +eel +
  Traes_4AS_6486B493A.1 105 MKGIKHGACDYLIKPVRMEELKN 127
                            ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.6E-1812669IPR017053Response regulator B-type, plant
SuperFamilySSF521727.54E-3516136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.5E-4116159No hitNo description
SMARTSM004484.4E-3017129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.32818133IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.3E-2319127IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.10E-2720132No hitNo description
PROSITE profilePS5129411.948200259IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-30200261IPR009057Homeodomain-like
SuperFamilySSF466891.36E-19201260IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-25203256IPR006447Myb domain, plants
PfamPF002497.8E-7205254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MAPPEEAGGG DQFPVGMKVL VVDDDQTCLA VLKRMLVQCR YDATTCSQAT RALAMLRENR  60
GAFDVIISDV HMPDMNGFRL LELVGLEMDL PVIMMSADSR TDLVMKGIKH GACDYLIKPV  120
RMEELKNIWQ HVVRKKFGGS KEHEHSGSLD DTDRNRLTNN DNEYASSAND GAEDSWKSQK  180
KKRDKEEDDS ELESGDPSNN SKKPRVVWSV ELHQQFVNAV NHLGIDKAVP KKILELMNVP  240
GLTRENVASH LQKFRLYLKR IAQHHAGMAN PYSVPASSAQ VASLGGLDFQ ALAASGQIPP  300
QALAALQDEL LGRPTNSLVL PGRDQSSLRL AAVKGNKPHG EQIAFGQPIY KVQNNSYAAL  360
PQNSSAVGRM PSFSAWPNNK LGMSDSMSAL GHVNNSQNSN MVLHELQQQP DTMLSGTLHT  420
LDVKPSGIVM PSQSLNTFPA SEGLSPNQNS LIIPSQSSGF LTGIPPSMKP ELVLPTSQSS  480
NSLLGGIDLI NQASTSQPFI SSHGGNLPGL MNRNSNVMPS QGISSFQTGN TPYLVNQNSM  540
GMGSKPPGVL KTESTDSLNQ NYAYANHMDS GLLSSQSKNA QFGFLQSPND ITGGWSSLQN  600
MDGYRNTVGP SQPVSSSSSF QSSNAALGKL PDQGRGKNLG FVGKGTCIPN RFAVDEIESP  660
TNSLSHSIGS SGDIPDMFGF SGQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-23202262464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519270.0JF951927.1 Triticum aestivum clone TaMYB44 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558456.10.0two-component response regulator ORR21
SwissprotQ8H7S70.0ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A3B6HQR90.0A0A3B6HQR9_WHEAT; Two-component response regulator
TrEMBLA0A446QPG20.0A0A446QPG2_TRITD; Two-component response regulator
STRINGTraes_4AS_6486B493A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-107response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]