PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_669BAF6C7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 223aa    MW: 23917.2 Da    PI: 6.8766
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_669BAF6C7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.82.4e-40521511100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCkvlrr+Ca++C+lapyfp + p+kf  +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g++ +lq++ +
  Traes_4AS_669BAF6C7.1  52 PCAACKVLRRRCADGCMLAPYFPPTGPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGTVCRLQKEAN 139
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            +lk++la+++++
  Traes_4AS_669BAF6C7.1 140 ELKVDLARAQAN 151
                            *******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.14251152IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-4052149IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDYSNEATIT AAAQPYGRSM SPPSRVSSCS PPPVFPLMGN APSSPPTIVL SPCAACKVLR  60
RRCADGCMLA PYFPPTGPAK FTTAHRVFGA SNIIKLLQDL PESSRADAVS SMVYEAEARL  120
RDPVYGCAGT VCRLQKEANE LKVDLARAQA NLLSIQTQHA NLLALVCVEF AANHRGDQQL  180
HQPPPLGDQL NGIGGSGGGA MYQPLYNSDF DSAPWEEARQ LWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-385115310112LOB family transfactor Ramosa2.1
5ly0_B2e-385115310112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9539371e-131EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150584.11e-153LOB domain-containing protein 1-like
SwissprotQ9LQR05e-59LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A3B6HQT51e-164A0A3B6HQT5_WHEAT; Uncharacterized protein
STRINGTraes_4AS_669BAF6C7.11e-165(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-61LOB domain-containing protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]