PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_6B1AEFACE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 712aa    MW: 82221.2 Da    PI: 7.3049
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_6B1AEFACE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.83.6e-1862147191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY++YA++ GF v ++++++  +++  t  t+ C+++gk++ + k+   + +++++tr++C ak + +++  +++++t++ l+HnH+
  Traes_4AS_6B1AEFACE.2  62 RFYKAYARKKGFGVIRRTTRHG-EDKMLTYFTLACNRQGKAQYSAKN---SFKPNPSTRMQCPAKSNFSRR-GENFCITTVTLDHNHP 144
                            5**************9998887.7888****************9999...999*****************9.9**************9 PP

                   FAR1  89 lap 91 
                            ++p
  Traes_4AS_6B1AEFACE.2 145 ISP 147
                            875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1562147IPR004330FAR1 DNA binding domain
PfamPF105511.8E-34267361IPR018289MULE transposase domain
PROSITE profilePS509669.433556594IPR007527Zinc finger, SWIM-type
PfamPF044344.3E-4564590IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-4569596IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MEPDLTLDEV AEQNRSAPDE EDEDAFVVEE IGDSSDDRQA EPTVALEPKK GMMFSSEDDA  60
VRFYKAYARK KGFGVIRRTT RHGEDKMLTY FTLACNRQGK AQYSAKNSFK PNPSTRMQCP  120
AKSNFSRRGE NFCITTVTLD HNHPISPSKA RFLRCHKKVD LHSKRRLELN DQAGARMNKN  180
FGSPVMEAGW YGNLEFGEKE CTNYLQEKRS LKLGAGDAHA LYQYFLHMQS KDPAFFHVMD  240
VAEDGRLRNV FWADARSRAA YESYWDVITF DTTYLTNKYT IPLATFVGIN HHGESVLLGC  300
GLLSNEDTET FVWLFKSWLC CMSCKPPNAI ITDQCKPMQN AIEEVFPQAR HRWCACHIMK  360
KIPENLNGYE NIKSTLSNVV YDSLTKHGFD KAWVEMINKY DLQENEWLAG LYDNKNRWVP  420
AYVKDTFWAG MSSTKRSESV NAFFDGYVNA RTTLKQFVEQ YENLLRDKVE KENKADSKSF  480
QQQIPCITHY DFERQFQAAY TTAKFKEFQD QLRGKIYCYP TQLNKEGSIF TFGVREDSKI  540
FCEGEDGKGK EKRVILEFIV LFNQGECDVQ CMCRLFEFRG ILCSHIISVL ALMEITDVPS  600
RYILQRWRKD IKRKHTFIRC SYDDMIDTQV VQRYDNLCKR SHELAENGAE SDALHDLVMD  660
GLNELQSKID AYCASVGCPP SKRKESKVDQ VVKKLRAKKQ QVPTNTNEMP SQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3897110.0HQ389711.1 Triticum aestivum clone UCDTA00162 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171727.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_020171728.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_020171729.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_020171730.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
RefseqXP_020171731.10.0protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
TrEMBLA0A446QKE80.0A0A446QKE8_TRITD; Uncharacterized protein
STRINGTraes_4AS_6B1AEFACE.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-130FAR1 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]