PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_9450AD3F4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 340aa    MW: 36511.7 Da    PI: 6.9105
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_9450AD3F4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.3e-16151201255
                    AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            g  GVr ++ +g+++AeIrd    + k +r++lg+f t+e Aa a+++a+ + +g
  Traes_4AS_9450AD3F4.1 151 GLIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFNTPEAAAMAYDQAAFSVRG 201
                            567******.**********32..2.24**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.14151209IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-20151210IPR016177DNA-binding domain
PRINTSPR003672.6E-7152163IPR001471AP2/ERF domain
PfamPF008478.3E-12153201IPR001471AP2/ERF domain
CDDcd000183.21E-15154211No hitNo description
Gene3DG3DSA:3.30.730.101.4E-26154209IPR001471AP2/ERF domain
SMARTSM003801.6E-28154215IPR001471AP2/ERF domain
PRINTSPR003672.6E-7175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEQQFIHFGA TTSSTSSFYS TPTPTPPPPE QAQAAATLAS STRDYHTSSS PMSSAFDMGD  60
TDDMHLLNTL LLHMSGSGTA ASSNHYAFDL HLDLDLHMDV DVEPSSSSTS SSSSSYSSSD  120
HHQQQQQQGM PATTTAKRRA PQQLHPAASK GLIGVRKRPW GKFAAEIRDS TRKGARVWLG  180
TFNTPEAAAM AYDQAAFSVR GAAAVLNYPV DRVQESLRTL ALRPDVPGGS PVLALKRRHS  240
IRKRSPNKAK KTATLLAPTK MMINDSAAAP VQQQSAAACA GVVELEDLGA DYLEELLRVS  300
DEPSASSTTM VMGAFDHHHH HHVDDQSALA NTAPMLLPHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-231542091772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181160.11e-128ethylene-responsive transcription factor ERF094-like
TrEMBLA0A3B6HNR70.0A0A3B6HNR7_WHEAT; Uncharacterized protein
STRINGTraes_4AS_9450AD3F4.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-44ethylene response factor 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]