PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AS_AA492B6A9.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 44aa MW: 5387.12 Da PI: 9.4842

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AS_AA492B6A9.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.8	6.4e-12	2	43	1	42
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 +fYn+YA e GFsvrks+ + n+ i+ r+ vCs++g+re Traes_4AS_AA492B6A9.1 2 EFYNKYALEKGFSVRKSYVEWDGSNKYIILRKIVCSRQGFRE 43 6***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-9	2	43	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 44 aa Download sequence Send to blast
YEFYNKYALE KGFSVRKSYV EWDGSNKYII LRKIVCSRQG FRED

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	4e-65	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188780.1	1e-22	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A446RF00	2e-21	A0A446RF00_TRITD; Uncharacterized protein
TrEMBL	A0A452XQP3	1e-20	A0A452XQP3_AEGTS; Uncharacterized protein
TrEMBL	A0A453B6N6	1e-20	A0A453B6N6_AEGTS; Uncharacterized protein
TrEMBL	A0A453GGC5	1e-20	A0A453GGC5_AEGTS; Uncharacterized protein
TrEMBL	A0A453JUJ9	1e-20	A0A453JUJ9_AEGTS; Uncharacterized protein
STRING	Traes_1BL_9BF41B805.1	2e-24	(Triticum aestivum)
STRING	Traes_4BL_0437CF0AD.1	2e-24	(Triticum aestivum)
STRING	Traes_4BL_0437CF0AD1.1	2e-24	(Triticum aestivum)
STRING	Traes_6AL_B082ABBFC.1	2e-24	(Triticum aestivum)
STRING	Traes_7AL_5585F9BD1.1	1e-24	(Triticum aestivum)
STRING	Traes_7AS_0437CF0AD.1	2e-24	(Triticum aestivum)

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]