PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_D20DF472E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 175aa    MW: 19458.6 Da    PI: 11.8263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_D20DF472E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000156587123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C + F ++  L  H++ H
  Traes_4AS_D20DF472E.1 65 FTCNYCQRKFFSSQALGGHQNAH 87
                           89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.64E-76292No hitNo description
PROSITE profilePS5015711.3236592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
GSGVRDQQPG GVQQQRGVQH LLPPQARPRP VAHRHRDRRR HDDRRVEHHR QXGGAQAARE  60
PTRVFTCNYC QRKFFSSQAL GGHQNAHRRE RTLARRAVHR LEAYPYGYAD VASLPLYGSP  120
GLYPIGIQAH ASALQGAAAQ AERQQHQHQQ QDAAVLAATP ARARALLGPM PFLVG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751190.0AK375119.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558394.13e-53zinc finger protein 4 isoform X2
TrEMBLA0A446QQ814e-83A0A446QQ81_TRITD; Uncharacterized protein
STRINGTraes_4AS_D20DF472E.11e-119(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-19zinc-finger protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]