PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_D4763E468.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 182aa    MW: 19205.8 Da    PI: 8.686
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_D4763E468.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00135274123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C+++F++   L  H  +H
  Traes_4AS_D4763E468.1 52 FECKTCSRRFPSFQALGGHRASH 74
                           89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-54878No hitNo description
PfamPF139124.0E-135176IPR007087Zinc finger, C2H2
SMARTSM003550.275274IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7855279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SuperFamilySSF576674.57E-590116No hitNo description
PfamPF139123.9E-992117IPR007087Zinc finger, C2H2
SMARTSM003552.593115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MAHGKRSRQQ AESTSVSLLD LDSGDMARIL LLFSGHHQHH AHYGPSSPER VFECKTCSRR  60
FPSFQALGGH RASHKKPRLA DGAGAEPPKP KVHGCSICGL EFAVGQALGG HMRRHRAVAA  120
AGPGVGLGLS LGLGPNEDGN KKAAAAAELA LDLNEPALEE EPADRAMLGL AVGFPVVVDF  180
RR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2448790.0DQ244879.1 Zea mays clone 11295 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228788.15e-82zinc finger protein ZAT11
TrEMBLA0A3B6HTK71e-127A0A3B6HTK7_WHEAT; Uncharacterized protein
TrEMBLA0A446QSI71e-127A0A446QSI7_TRITD; Uncharacterized protein
STRINGTraes_4AS_D4763E468.11e-128(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-27C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]