PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AS_E20BDE652.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 383aa MW: 39721.1 Da PI: 9.5317

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AS_E20BDE652.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.4e-38	87	147	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCdstntkfCyynnyslsqPr+fCkaCrryWt+GGalr vPvGgg+r+nk+ss Traes_4AS_E20BDE652.1 87 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRSS 147 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-33	71	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.0E-33	90	145	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.553	91	145	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	93	129	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MVFPPAAAYL DPPNWNNQQG QQQRATGGGG VGDAQHMPVD PTAGTAAGTP EVGGLPRSSA 60 ANEAAAGQQA RPNSMTERAR MARVPQPEPA LKCPRCDSTN TKFCYYNNYS LSQPRHFCKA 120 CRRYWTRGGA LRSVPVGGGC RRNKRSSKSS AGAASSSKPS SSSARQLPGG ASSMPSTAAS 180 TTLGCDGASI PPGLSSMSHH LPFMGAMHPP GANLGLAFSA GLPQLAMQQH HHHMDGVDQF 240 PLASGGGATF GASLEQWRVQ QQQQQQFPFL ELPPAPPMYQ LGLQANRAAG SSAAAPAPSP 300 AMFTLGQSSA STARRDEGSM KQADSKGQEM TLQRQFVMEA LRQGDGVWGG NASDNNGNGS 360 GSWTMNIPGF HSSSGGGDGG GLL

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MVFPPAAAYL DPPNWNNQQG QQQRATGGGG VGDAQHMPVD PTAGTAAGTP EVGGLPRSSA  60
ANEAAAGQQA RPNSMTERAR MARVPQPEPA LKCPRCDSTN TKFCYYNNYS LSQPRHFCKA  120
CRRYWTRGGA LRSVPVGGGC RRNKRSSKSS AGAASSSKPS SSSARQLPGG ASSMPSTAAS  180
TTLGCDGASI PPGLSSMSHH LPFMGAMHPP GANLGLAFSA GLPQLAMQQH HHHMDGVDQF  240
PLASGGGATF GASLEQWRVQ QQQQQQFPFL ELPPAPPMYQ LGLQANRAAG SSAAAPAPSP  300
AMFTLGQSSA STARRDEGSM KQADSKGQEM TLQRQFVMEA LRQGDGVWGG NASDNNGNGS  360
GSWTMNIPGF HSSSGGGDGG GLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375844	0.0	AK375844.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107J22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179480.1	0.0	dof zinc finger protein DOF5.1-like
TrEMBL	A0A3B6HQH9	0.0	A0A3B6HQH9_WHEAT; Uncharacterized protein
TrEMBL	A0A446QRV8	0.0	A0A446QRV8_TRITD; Uncharacterized protein
STRING	Traes_4AS_E20BDE652.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	5e-36	Dof family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]