PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_011308A76.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family BBR-BPC
Protein Properties Length: 99aa    MW: 10956.7 Da    PI: 10.5301
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_011308A76.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind241.84.9e-74199203301
              GAGA_bind 203 lDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290
                            +D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WA
  Traes_4BL_011308A76.1   1 FDISRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWA 88 
                            7*************************************************************************************** PP

              GAGA_bind 291 kHGtnkfvtir 301
                            kHGtnkfvtir
  Traes_4BL_011308A76.1  89 KHGTNKFVTIR 99 
                            **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.7E-36199IPR010409GAGA-binding transcriptional activator
PfamPF062177.2E-73199IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
FDISRIPTPV CSCTGAPQQC YRWGAGGWQS ACCTTSISTY PLPMNTKRRG ARIAGRKMSQ  60
GAFKKVLEKL AGEGYNLNNP IDLKTFWAKH GTNKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5072141e-153AJ507214.1 Hordeum vulgare bbr gene for barley B recombinant.
GenBankAK3726721e-153AK372672.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3008N24.
GenBankAK3763891e-153AK376389.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165863.19e-69protein Barley B recombinant
SwissprotQ8GUC31e-69BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A287PDI93e-69A0A287PDI9_HORVV; Uncharacterized protein
STRINGEMT032732e-68(Aegilops tauschii)
STRINGTraes_4BL_011308A76.13e-69(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.33e-59basic pentacysteine 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]