PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_085791CB2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 257aa    MW: 26296.5 Da    PI: 8.4653
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_085791CB2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.3e-0814403557
                           HHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox 35 kkl....gLterqVkvWFqNrRakekk 57
                           k l     + +++V++WFqNrR + ++
  Traes_4BL_085791CB2.1 14 KLLerfgAVGDANVFYWFQNRRSRSRR 40
                           444555568899************997 PP
2Wus_type_Homeobox62.11.2e-201422465
      Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                           +++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
  Traes_4BL_085791CB2.1  1 MVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 42
                           78**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.762141IPR001356Homeobox domain
SuperFamilySSF466891.53E-7348IPR009057Homeodomain-like
PfamPF000462.4E-5740IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-41947IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVNPPKDETV RIRKLLERFG AVGDANVFYW FQNRRSRSRR RQRQMQAAAA AAAAAAAAAS  60
SATANSLPAA SATIGLPSGT GSVHPMAIGG CASQYEQQAT SSSSSGSTGG SSLGPFAAHG  120
AGVPGAGVGY LQASCGTSSP LASGLMADVD TGGSDDLFAI SRQMGFVGSP AGPSSSAPST  180
AVQQQYYSCQ LPAATITVFI NGVPMEVPRG PIDLRAMFGQ DVVLLHSTGT LLPVNDYGIL  240
IQSLQMGESY FLVSRQT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164667.11e-122WUSCHEL-related homeobox 6-like
SwissprotQ10M292e-82WOX6_ORYSJ; WUSCHEL-related homeobox 6
TrEMBLA0A3B6IR200.0A0A3B6IR20_WHEAT; Uncharacterized protein
TrEMBLA0A446S4S40.0A0A446S4S4_TRITD; Uncharacterized protein
STRINGTraes_4BL_085791CB2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-22WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]