PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_340D5E00A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 224aa    MW: 24503.7 Da    PI: 6.103
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_340D5E00A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS881.6e-2769207137276
                   GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222
                            +gpp++RiT v+ p++g   ++ + e+g+rL++ A+++ vp++f+++    +++ ++++L+v+p+E+l+Vn +++  +l+desv ++s
  Traes_4BL_340D5E00A.1  69 GGPPEVRITNVDLPQPGfrPENHMAEMGHRLSSCARQFCVPLKFRAV----VAEWHIDDLNVEPDEVLVVNDMFNFRTLMDESVLTDS 152
                            79**************9*9***************************7....55677889************************98888 PP

                   GRAS 223 ..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                              +rd vL+ + +++P+v++    + ++ ++ Fl rf eal y+salfd+++a ++
  Traes_4BL_340D5E00A.1 153 psPRDVVLSNISKMKPEVFIQGIVNGSY-GTFFLSRFREALFYHSALFDMFDAMAA 207
                            779************************9.789*******************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.031224IPR005202Transcription factor GRAS
PfamPF035145.5E-2569207IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
NAPRWWSSSR PTSSSCPPAA SGRWPSPSPT RPSLTLRRGG ASCTSWITAS IPDSSGRSCC  60
ACWQPGTYGG PPEVRITNVD LPQPGFRPEN HMAEMGHRLS SCARQFCVPL KFRAVVAEWH  120
IDDLNVEPDE VLVVNDMFNF RTLMDESVLT DSPSPRDVVL SNISKMKPEV FIQGIVNGSY  180
GTFFLSRFRE ALFYHSALFD MFDAMAAAGV EGTDPLSTLN VGVG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024319189.12e-64scarecrow-like protein 9
TrEMBLA0A3L6PJW33e-73A0A3L6PJW3_PANMI; Scarecrow-like protein 14
STRINGTraes_4BL_340D5E00A.11e-165(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.18e-35SCARECROW-like 14
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]