PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_38E55D7B4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 484aa    MW: 53277.6 Da    PI: 7.323
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_38E55D7B4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-056789123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y C+ C+k F r  nL+ H r H
  Traes_4BL_38E55D7B4.1 67 YICEVCHKGFQRDQNLQLHRRGH 89
                           89*******************88 PP
2zf-C2H211.60.00089143165123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC+ C+k +  +s+ k H + +
  Traes_4BL_38E55D7B4.1 143 WKCERCSKKYAVQSDWKAHTKIC 165
                            58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.03E-66689No hitNo description
SMARTSM003550.0386789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7416789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035562108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.03E-6138163No hitNo description
SMARTSM00355220143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSHTSEEESL SSFQQQPKLE VGAAGPSRGD PAAMPVVKKR RGHPGNPDPD VEVVALSPKT  60
LVATNRYICE VCHKGFQRDQ NLQLHRRGHN LPWKLKQRSS TDAKKKVYVC PEVTCPHHDA  120
TRALGDLTGI KKHFSRKHGE KKWKCERCSK KYAVQSDWKA HTKICGTKEY RCDCGTIFSR  180
KDSFITHRAF CDVLAEDNSR VNHSLATMVG SLHGQHDMYS HGVPSPTDMV ANMSSNDHNS  240
DMHLRSLSPY ALITRNTALF SNQIPPKDPG FPLDGSASGY PYMSMNSPYM SATALLQKAA  300
EMGAKTSQDP ISPLLLKGFA NNFTSARDHM GISSGSQGDS MGNSAANSVC MKAAEDESMN  360
GHNNILINSA WTSGMMTPTT VPLIGLMNNP FSMRQEKESP QIMPDIQTQH NRQENISEVG  420
DAGLTQDFLG LGGNGNLDIS SGTYNTDVTA LSYSDDQQKN QEQMYSYHES SLDSTALDKP  480
MWDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33139202366Zinc finger protein JACKDAW
5b3h_F4e-33139202366Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163244.10.0protein indeterminate-domain 9-like
TrEMBLA0A3B6IVD50.0A0A3B6IVD5_WHEAT; Uncharacterized protein
STRINGTraes_4BL_38E55D7B4.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]