PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_410DEBFD3.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 127aa    MW: 14486.7 Da    PI: 10.7448
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_410DEBFD3.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.11.3e-241261251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           rien   rqvtfskRr g++KKA ELS+LCdaev + +fs tgkl+ ++s
  Traes_4BL_410DEBFD3.2 12 RIENLAARQVTFSKRRRGLFKKAGELSILCDAEVGLAVFSATGKLFQFAS 61
                           8**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.997363IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-32362IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-25525IPR002100Transcription factor, MADS-box
CDDcd002651.62E-37576No hitNo description
SuperFamilySSF554554.71E-30588IPR002100Transcription factor, MADS-box
PfamPF003198.1E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-252540IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-254061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MAGKRERIAI RRIENLAARQ VTFSKRRRGL FKKAGELSIL CDAEVGLAVF SATGKLFQFA  60
SSSMNQIIDR YNSHSKILKK ADEPSQLDLH EDSNCARLRD ELAEASLWLQ QGAFVVSKRC  120
IRQYKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-20576374MEF2C
5f28_B6e-20576374MEF2C
5f28_C6e-20576374MEF2C
5f28_D6e-20576374MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5123330.0DQ512333.1 Triticum aestivum MADS-box transcription factor TaAGL13 (AGL13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161640.16e-75MADS-box transcription factor 47-like
SwissprotQ5K4R02e-56MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLA0A446SEZ72e-87A0A446SEZ7_TRITD; Uncharacterized protein
STRINGTraes_4BL_410DEBFD3.24e-88(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-39MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]