PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_581E788ED.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 67aa    MW: 7639.75 Da    PI: 8.0829
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_581E788ED.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113151323
                           ETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                           C +C++ F ++  L  H++ H
  Traes_4BL_581E788ED.1 31 CVYCDRQFVTSQALGGHQNAH 51
                           ******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.58E-102264No hitNo description
PROSITE profilePS5015710.8242956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803153IPR007087Zinc finger, C2H2
PfamPF121716.9E-53153IPR022755Zinc finger, double-stranded RNA binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MEQLTGEQEE LCLELTLRPM VPEPRVGFFL CVYCDRQFVT SQALGGHQNA HKHERSVAKR  60
RRQAAAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169302.15e-36zinc finger protein 2-like
TrEMBLA0A3B6IXT91e-41A0A3B6IXT9_WHEAT; Uncharacterized protein
TrEMBLA0A446SJL01e-41A0A446SJL0_TRITD; Uncharacterized protein
STRINGTraes_4BL_581E788ED.18e-43(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.15e-14C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]