PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_58F4541EF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 96aa    MW: 10750.1 Da    PI: 8.1288
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_58F4541EF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-112650126
                           --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                           +ktelC+ +   G C+yG+rC+FaHg
  Traes_4BL_58F4541EF.1 26 QKTELCNKWEG-GACSYGGRCRFAHG 50
                           69*******98.*************9 PP
2zf-CCCH21.63.8e-076389127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                           ykt +C+ fa+   C+yG rC+F H+p
  Traes_4BL_58F4541EF.1 63 YKTLPCQMFAAASGCPYGHRCHFRHSP 89
                           9************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-132257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9762552IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-72551IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-82655IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-92650IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-115889IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-85988IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8316290IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-46289IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-46389IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
IYQAGEDEAK GDGEVVELEA YRQGTQKTEL CNKWEGGACS YGGRCRFAHG LQEMRPVIRH  60
PRYKTLPCQM FAAASGCPYG HRCHFRHSPA PTAQSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A8e-1927901175Tristetraproline
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186688e-81AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372678e-81AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149598e-81AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126118e-81CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199363.16e-65putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN82e-46C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A3B6JKU61e-63A0A3B6JKU6_WHEAT; Uncharacterized protein
STRINGTraes_4BL_58F4541EF.11e-66(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-38C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]