PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_5B2AF2556.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 154aa    MW: 16440.2 Da    PI: 8.9637
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_5B2AF2556.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.43.5e-1362110155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s++kGV   + +grW A+I+d      r +r+++g+f  ++ Aa+a++ a+++++g
  Traes_4BL_5B2AF2556.1  62 SRFKGVVPQP-NGRWGAQIYD------RhARVWIGTFPDEDAAARAYDVAALRYRG 110
                            789***9788.8*********......44**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1762119IPR016177DNA-binding domain
PfamPF008472.9E-862110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1963119IPR001471AP2/ERF domain
SMARTSM003801.5E-2163124IPR001471AP2/ERF domain
PROSITE profilePS5103220.81163118IPR001471AP2/ERF domain
CDDcd000182.10E-1263118No hitNo description
PRINTSPR003675.4E-76475IPR001471AP2/ERF domain
PRINTSPR003675.4E-7100120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MGVQILSSTP EHSSQHSSGA STATTESGAA GRLPTTLGLP VAIPDEAVTS RSASASAQWA  60
SSRFKGVVPQ PNGRWGAQIY DRHARVWIGT FPDEDAAARA YDVAALRYRG LDAATNFPRT  120
ASSTELAFLA AHSKAEIVDM LRKHTYSDEL RRGL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191174.12e-79AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X2
RefseqXP_020200372.12e-79AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X2
RefseqXP_020201147.12e-79AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X2
SwissprotQ9LS064e-44RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A3B6IWE81e-104A0A3B6IWE8_WHEAT; Uncharacterized protein
STRINGTraes_4BL_5B2AF2556.11e-108(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1870756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.15e-33ethylene response DNA binding factor 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]