PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_61E35C455.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 158aa    MW: 18824.8 Da    PI: 12.6086
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_61E35C455.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-103282147
                           TT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqky 47
                           g++W++Iar+++ gRt++++k++w+++
  Traes_4BL_61E35C455.1  3 GRRWSAIARCLP-GRTDNEIKNYWRTH 28
                           466*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001672.95E-8129No hitNo description
PROSITE profilePS5129414.386133IPR017930Myb domain
SuperFamilySSF466891.01E-7332IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-12329IPR009057Homeodomain-like
PfamPF002491.4E-7428IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDGRRWSAIA RCLPGRTDNE IKNYWRTHFK KARPSRRARA QLLHQYQLQQ QQQHRQYLHA  60
LHLLQQQQQQ MQMQLQENHH HQQQQQAMMM AQQSPPEEXX XXXXXXXXXX XXXXXXXPGG  120
VGGARPPAPG RRRGRAVGQP LAARRRRGRL QRRRLRRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130146RRRGRAVGQPLAARRRR
2148157RLQRRRLRRV
3150156QRRRLRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221493e-69AC122149.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0083D24, complete sequence.
GenBankAC1376973e-69AC137697.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0081A17, from chromosome 3, complete sequence.
GenBankAP0149593e-69AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126113e-69CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A287PXF79e-25A0A287PXF7_HORVV; Uncharacterized protein
TrEMBLA0A287PXG12e-25A0A287PXG1_HORVV; Uncharacterized protein
STRINGTraes_4BL_61E35C455.12e-88(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.19e-13myb domain protein 79
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]