PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_78DD63002.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 205aa    MW: 22631.6 Da    PI: 8.8556
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_78DD63002.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-183791256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Traes_4BL_78DD63002.1 37 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 91
                           788899***********************************************98 PP
2HD-ZIP_I/II127.17.8e-4137125190
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr
  Traes_4BL_78DD63002.1  37 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELR 124
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 ee 90 
                             +
  Traes_4BL_78DD63002.1 125 -A 125
                            .4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-182392IPR009057Homeodomain-like
SuperFamilySSF466893.68E-192894IPR009057Homeodomain-like
PROSITE profilePS5007117.2323393IPR001356Homeobox domain
SMARTSM003897.8E-163597IPR001356Homeobox domain
PfamPF000461.1E-153791IPR001356Homeobox domain
CDDcd000862.10E-153794No hitNo description
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PfamPF021832.8E-1193126IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.1E-2393136IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSVGGAVKRE RAEEADLGEM VSSTAAGAEE DDDGSTRKKL RLTKEQSALL EDRFKEHSTL  60
NPKQKVALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE FLKRCCETLT EENRRLQREL  120
QELRAIKFAP PPPPNNASQH PGTPSSAAAP PAPFYMQLPA ATLTICPSCE RLGGTAATAA  180
GKVDPDRPKA ATHHFFNPFT HSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541TRKKLRL
28593RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977881e-145FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173855.11e-149homeobox-leucine zipper protein HOX19-like
SwissprotA2XE761e-106HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-106HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A3B6IRQ41e-149A0A3B6IRQ4_WHEAT; Uncharacterized protein
TrEMBLA0A446SAE81e-149A0A446SAE8_TRITD; Uncharacterized protein
STRINGTraes_4BL_78DD63002.11e-149(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-55homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]