PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_7EC2BFC7B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 243aa    MW: 25899.4 Da    PI: 4.4193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_7EC2BFC7B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19958255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f +ae Aa a+++a+++++g
  Traes_4BL_7EC2BFC7B.1  9 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPSAEAAALAYDEAARAIRG 58
                           69*******.**********75....44************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.16E-18865No hitNo description
Gene3DG3DSA:3.30.730.101.5E-31967IPR001471AP2/ERF domain
SMARTSM003807.9E-36972IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-22967IPR016177DNA-binding domain
PROSITE profilePS5103223.868966IPR001471AP2/ERF domain
PfamPF008476.1E-13958IPR001471AP2/ERF domain
PRINTSPR003672.1E-101021IPR001471AP2/ERF domain
PRINTSPR003672.1E-103248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
PARRRKPAQY RGVRRRPWGK WAAEIRDPVK GVRVWLGTFP SAEAAALAYD EAARAIRGPR  60
AKLNFSSSSA VAAAAPGARK RGRAAPPAAK PAPVITLVDD EEEHASSFVK HEAEASEGSE  120
SSGALPDFSW QGISAFDEAP AYPAPEPETE QLTKRARTTE AEDTDEGMSA HPASDSDSDA  180
LFDALLFADQ FAFFNGGAYE SLDSLFSADA VQSSATATAV NEAALGLWTF DDDCLVDECS  240
LSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20665262ATERF1
3gcc_A1e-20665262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315RRKPAQYRGVRRR
27783ARKRGRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640861e-165AK364086.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2021I23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163641.11e-132ethylene-responsive transcription factor ERF073-like
TrEMBLA0A3B6IVF31e-170A0A3B6IVF3_WHEAT; Ethylene response factor
STRINGTraes_4BL_7EC2BFC7B.11e-172(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-21ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]