PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_8719DBF92.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 123aa MW: 13270 Da PI: 10.8749

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_8719DBF92.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.2	8.8e-29	74	123	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt+ LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ Traes_4BL_8719DBF92.1 74 PRMRWTTALHAHFVQAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 123 9************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-25	70	123	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-14	71	123	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-21	74	123	IPR006447	Myb domain, plants
Pfam	PF00249	7.4E-7	75	123	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MAISAESTEL CLGFDMATAR QSGEVRNGHS DLEQRLHQPS QIPRFKKSSA DSQVGSSGGA 60 ARSGNGGKKS SRAPRMRWTT ALHAHFVQAV QLLGGHERAT PKSVLELMNV KDLTLAHVKS 120 HLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	75	123	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	75	123	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	75	123	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	75	123	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	75	123	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	75	123	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	75	123	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	75	123	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	75	123	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	75	123	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	75	123	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	75	123	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189915.1	2e-81	probable transcription factor RL9
Swissprot	Q9FJV5	7e-31	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	A0A3B6INT0	3e-83	A0A3B6INT0_WHEAT; Uncharacterized protein
TrEMBL	A0A446RU54	3e-84	A0A446RU54_TRITD; Uncharacterized protein
TrEMBL	A0A446RU55	3e-83	A0A446RU55_TRITD; Uncharacterized protein
STRING	Traes_4BL_8719DBF92.1	1e-85	(Triticum aestivum)
STRING	Traes_4BS_481D51B66.2	4e-85	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3742	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	2e-29	G2-like family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]