PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_9422485B3.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 375aa MW: 40510.7 Da PI: 7.5387

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_9422485B3.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.4	8.3e-10	179	233	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l + l Traes_4BL_9422485B3.2 179 KRAKRILANRQSAARSKERKARYMTELERKVQTLQTEATTLSAQLTLFQRDTTGL 233 9****************************************99988776665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.3E-15	175	239	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.668	177	240	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-8	179	233	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.37E-10	179	230	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-8	179	234	No hit	No description
CDD	cd14703	2.46E-20	180	229	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MQQPKPADPP GRPFPPPSPS MAAAATAMRG AHHRRARSEV AFHLPDDLDI GGGADGDGSA 60 GFDEIGSEDD LFSTFMDIEK ISSGPAAGSD RDRDRAAETS SPPRPKHRYS SSXRAAEPSS 120 PPRPKHRYSS SVDGSGLFSA AGSAARRDAA AAQALADVLE AKKAMSPEQL AELAAIDPKR 180 AKRILANRQS AARSKERKAR YMTELERKVQ TLQTEATTLS AQLTLFQRDT TGLSSENAEL 240 KIRLQAMEQQ AQLRDALNDA LKQEVERLKM ATGEMSNSSD AYSVGLQHVL YNSSFFPQSQ 300 QNTAQHQGGA RFPPPFHPPH PNVPNHQMLS HPNTLSDIMQ QDHLARLQGL DISKGHPVVK 360 SESSSISASE SSSTF

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MQQPKPADPP GRPFPPPSPS MAAAATAMRG AHHRRARSEV AFHLPDDLDI GGGADGDGSA  60
GFDEIGSEDD LFSTFMDIEK ISSGPAAGSD RDRDRAAETS SPPRPKHRYS SSXRAAEPSS  120
PPRPKHRYSS SVDGSGLFSA AGSAARRDAA AAQALADVLE AKKAMSPEQL AELAAIDPKR  180
AKRILANRQS AARSKERKAR YMTELERKVQ TLQTEATTLS AQLTLFQRDT TGLSSENAEL  240
KIRLQAMEQQ AQLRDALNDA LKQEVERLKM ATGEMSNSSD AYSVGLQHVL YNSSFFPQSQ  300
QNTAQHQGGA RFPPPFHPPH PNVPNHQMLS HPNTLSDIMQ QDHLARLQGL DISKGHPVVK  360
SESSSISASE SSSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369285	0.0	AK369285.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2088F01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175873.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-161	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A3B6JJ00	0.0	A0A3B6JJ00_WHEAT; Uncharacterized protein
STRING	Traes_4BL_9422485B3.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-72	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]