PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_B92B51F5D.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 248aa MW: 27341 Da PI: 6.6053

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_B92B51F5D.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.8	1.5e-55	25	152	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdee++++yL++k+ ++++ vi evd++k+ePw+Lp k+k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgk Traes_4BL_B92B51F5D.1 25 LPPGFRFHPTDEEIISHYLTPKALDHRFCS-GVIGEVDLNKCEPWHLPGKAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGK 111 79***********************888.89***********99999******************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ +g lvg+kktLvfy grap+gekt Wvmhe+rle Traes_4BL_B92B51F5D.1 112 DKEIFRGRGILVGMKKTLVFYLGRAPRGEKTGWVMHEFRLE 152 ************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.01E-63	17	175	IPR003441	NAC domain
PROSITE profile	PS51005	57.262	25	175	IPR003441	NAC domain
Pfam	PF02365	4.2E-29	26	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MSEASVVNQA EVEDAAAAAA AGLDLPPGFR FHPTDEEIIS HYLTPKALDH RFCSGVIGEV 60 DLNKCEPWHL PGKAKMGEKE WYFFCHKDRK YPTGTRTNRA TESGYWKATG KDKEIFRGRG 120 ILVGMKKTLV FYLGRAPRGE KTGWVMHEFR LEGKLTHPLP RSAKDEWAVS KVFNKELTAT 180 NGAMAAAEAG IERVSSLGFI TDFLDSGELP PLMDPPLGGD VDEVIDFKST SAYATGAHSG 240 LQVKMEQH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-53	23	179	18	172	NAC domain-containing protein 19
3swm_B	1e-53	23	179	18	172	NAC domain-containing protein 19
3swm_C	1e-53	23	179	18	172	NAC domain-containing protein 19
3swm_D	1e-53	23	179	18	172	NAC domain-containing protein 19
3swp_A	1e-53	23	179	18	172	NAC domain-containing protein 19
3swp_B	1e-53	23	179	18	172	NAC domain-containing protein 19
3swp_C	1e-53	23	179	18	172	NAC domain-containing protein 19
3swp_D	1e-53	23	179	18	172	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376297	0.0	AK376297.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3120C21.
GenBank	FR819763	0.0	FR819763.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC013 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020162549.1	1e-175	NAC domain-containing protein 92-like
Swissprot	Q9FK44	9e-90	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A3B6IR16	0.0	A0A3B6IR16_WHEAT; Uncharacterized protein
TrEMBL	A0A446S4P1	0.0	A0A446S4P1_TRITD; Uncharacterized protein
STRING	Traes_4BL_B92B51F5D.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-85	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]