PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_C7F1E5ECA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 62aa    MW: 6859.85 Da    PI: 7.9519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_C7F1E5ECA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.9e-064161121
                           EEETTTTEEESSHHHHHHHHH CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                           ++C++C+k F r  nL+ H r
  Traes_4BL_C7F1E5ECA.1 41 FVCEICNKGFQRDQNLQLHRR 61
                           89*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-64061IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.79E-54161No hitNo description
PROSITE profilePS501579.9724162IPR007087Zinc finger, C2H2
PfamPF121711.5E-54162IPR022755Zinc finger, double-stranded RNA binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
FTERARLLLA CGGDLGSCTH ADPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR  60
RG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759901e-60AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237443.11e-22PREDICTED: protein indeterminate-domain 9
SwissprotQ9LVQ78e-23IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A438GP472e-22A0A438GP47_VITVI; Protein indeterminate-domain 1
TrEMBLA0A453P9466e-22A0A453P946_AEGTS; Uncharacterized protein
STRINGTraes_4BL_C7F1E5ECA.13e-39(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2461645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.13e-25C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]