PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_D44ACD58E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 61aa    MW: 6708.8 Da    PI: 10.4759
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_D44ACD58E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26036.61.3e-111760139
                 DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGa 39
                           +C++C+vlr++Ca+dC+++p++     p++q++++ +++k++G+
  Traes_4BL_D44ACD58E.1 17 SCNGCRVLRKGCADDCTIRPCLawirsPDAQANATVFLAKFYGR 60
                           6*************************999**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.7591661IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-81760IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
TFRGGKKEAR PTTMRASCNG CRVLRKGCAD DCTIRPCLAW IRSPDAQANA TVFLAKFYGR  60
A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3730513e-48AK373051.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3019B19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199212.19e-28LOB domain-containing protein 41-like
RefseqXP_021998462.11e-27LOB domain-containing protein 41-like
SwissprotQ9M8861e-25LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A453J8E54e-27A0A453J8E5_AEGTS; Uncharacterized protein
STRINGTraes_4BL_D44ACD58E.19e-38(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-28LOB domain-containing protein 41
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]