PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_F1FE29573.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 541aa    MW: 58448.6 Da    PI: 4.8528
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_F1FE29573.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018396421123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            ++C   +C+++F+ + +L +H ++ +
  Traes_4BL_F1FE29573.2 396 FECDidYCHMTFKKRAELSVHKKNmC 421
                            89*******************99866 PP
2zf-C2H213.30.00024421443323
                            ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                            C+   Cgk+F+++ +L+rH++ H
  Traes_4BL_F1FE29573.2 421 CTikSCGKHFRSHKYLRRHQSIH 443
                            77779***************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035529396418IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.424419448IPR007087Zinc finger, C2H2
SMARTSM003550.46419443IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-6420443IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280421443IPR007087Zinc finger, C2H2
SuperFamilySSF576678.1E-11435477No hitNo description
Gene3DG3DSA:3.30.160.601.3E-12444471IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.214449478IPR007087Zinc finger, C2H2
SMARTSM003550.0012449473IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280451473IPR007087Zinc finger, C2H2
SuperFamilySSF576678.89E-9465502No hitNo description
Gene3DG3DSA:3.30.160.604.9E-10472500IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035540479501IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MXXXXXXXXX AADVVAALRV TTVASFDNKG VAQPDIKMEA SPANDSAAEM AFVHSCSLVT  60
EAATHPGLPE RVSLANGAAT EREASEAGSL VSEPAAEAAD VVTALEVTTG APLDNEGTAE  120
PEIKIGPSFA NESTAEMDSV LLGSLVTEAT THPGLIGRVS LVTETGVTGG ANLDTEVSIE  180
PEDTGRPSLL NESTELEITR GVSIATDAAS EPEVTGQACS GDGDAALNEP ETLDCDLDSA  240
NVQIENAGES VATEVQPSRD DKGDVGYVNA MSTCPVTDKS LAFDEVIPQD DAPGVSCASG  300
VVVRSVGKSG RSDVICYARR RGKRKLDMEE TKTDQLEMGD GDIYGQCEEK ATFDITVPCE  360
SAMSTAESAD IKLADIKRGL VDNSASSKGK KRKGRFECDI DYCHMTFKKR AELSVHKKNM  420
CTIKSCGKHF RSHKYLRRHQ SIHNEEAPYK CPWEGCSMAF KWTWALADHF QVHTGEKPYK  480
CRTPGCSKIY KYVSDFTRHR MRCKAQRILL QCLCIYRFAC LNICCKIQDG LFILLRYSPI  540
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-3939650223129Lysine-specific demethylase REF6
6a58_A1e-3939650223129Lysine-specific demethylase REF6
6a59_A1e-3939650223129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318324RRRGKRK
2318325RRRGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197869.10.0uncharacterized protein LOC109783681 isoform X2
TrEMBLA0A3B6IVX80.0A0A3B6IVX8_WHEAT; Uncharacterized protein
STRINGTraes_4BL_F1FE29573.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-39C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]