PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_F7A02A7FD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 254aa    MW: 28528.9 Da    PI: 4.826
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_F7A02A7FD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.41.4e-241791471
                E2F_TDP 14 lklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                           +k++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Traes_4BL_F7A02A7FD.1  1 MKVCEKVESkGRTTYNEVADELVAEftdpnnnieppdpdnpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 79
                           589****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094047.8E-1051252IPR015648Transcription factor DP
SuperFamilySSF467851.63E-17180IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-38184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.2E-28179IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.1E-22179IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144582.06E-3684187IPR014889Transcription factor DP, C-terminal
SMARTSM011387.7E-7686250IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.51E-3986196No hitNo description
PfamPF087811.2E-3987222IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKVCEKVESK GRTTYNEVAD ELVAEFTDPN NNIEPPDPDN PNAQQYDEKN IRRRVYDALN  60
VLMAMDIISK DKKEIQWKGL PRTSINDIEE LQADLAGVKG RIEKKSAYLQ ELQDQYLGMQ  120
NLINRNEQLY GSGNIPSGGV ALPFILIQTR PHATVEVEIS EDMQLVHFDF NTTPFELHDD  180
SYVLKALNSY GKEENAGTSE PISNGCEGSS TPNFYRHQIQ QSAMASNGTN RLPSSPPPPV  240
PGILKGRVKH EHLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-321841793PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169029.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-104DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A446SCT90.0A0A446SCT9_TRITD; Uncharacterized protein
STRINGTraes_4BL_F7A02A7FD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-102Transcription factor DP
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]