PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_180379032.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 130aa    MW: 14396.6 Da    PI: 6.5219
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_180379032.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-191465155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           ++y+GVr+++ +g+++AeIrd s    +  r +lg+f+taeeAa+a+++ + +++g
  Traes_4BS_180379032.1 14 TKYRGVRRRP-WGKFAAEIRDSSR---HgVRMWLGTFDTAEEAAAAYDRSAYSMRG 65
                           69********.**********432...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-131465IPR001471AP2/ERF domain
CDDcd000181.10E-271474No hitNo description
SuperFamilySSF541713.66E-231574IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-301574IPR001471AP2/ERF domain
PROSITE profilePS5103223.6171573IPR001471AP2/ERF domain
SMARTSM003809.8E-321579IPR001471AP2/ERF domain
PRINTSPR003673.3E-111627IPR001471AP2/ERF domain
PRINTSPR003673.3E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MEGGEGSGGG GEPTKYRGVR RRPWGKFAAE IRDSSRHGVR MWLGTFDTAE EAAAAYDRSA  60
YSMRGRNAVL NFPDRAHIYE AEARGQGQGS SSSSRQQNQQ QQGQSGVIEF EYLDDDVLQS  120
MLHDHDKGNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-3461305127Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0090601e-173BT009060.1 Triticum aestivum clone wdr1f.pk003.l5:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199104.12e-71ethylene-responsive transcription factor 14-like
SwissprotQ9LSX03e-34ERF96_ARATH; Ethylene-responsive transcription factor ERF096
SwissprotQ9LTC53e-34ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3B6ILC72e-90A0A3B6ILC7_WHEAT; Uncharacterized protein
TrEMBLA0A446RP082e-90A0A446RP08_TRITD; Uncharacterized protein
STRINGTraes_4BS_180379032.13e-91(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.14e-29ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]