PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BS_23455E24F.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 437aa MW: 46312.3 Da PI: 9.4385

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BS_23455E24F.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	194	216	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+dC++ F ++L+ H t H Traes_4BS_23455E24F.1 194 PCSDCDEFFVKADSLELHRATrH 216 6******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	195	216	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.06E-15	218	430	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.2E-10	223	431	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MDAPAAGKKM SIGGEKKEQR KSGSSFWRAM ALKSRSQPAG AVESKNSRSE RKKTTTTTKR 60 SVSSIGRSMT CPGSICGTKE SAVLSRESER KNSGRNVSSS SRSLKAPDND IMSVPVVASG 120 AVVSASSSFN SETSVATTAT TVSSSSSSSS ALSSPLSSIV AGSRSFRKLS GCYYECHSVL 180 DPRTSLVGGA GMLPCSDCDE FFVKADSLEL HRATRHAVSE LGAEDTSRNV VEIIFQSSWL 240 VGKPRAAPIC RIERILKVHS SGKTVERFEQ YRERVKAIAA SSTDELARRS FPRCAADGNE 300 ILRFHCTTFT CSLGLAGATS LCRSSPQHCK LCSIIRDGFR VDGDGKIATM ATSGRAHDKT 360 QTPLSGGSGG GEKRAMLVCR VVAGRVKKLV NSSNSSEESS GDSVSSCSDL DELSVFNPLA 420 ILPCFVVMYT VATDIIT

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MDAPAAGKKM SIGGEKKEQR KSGSSFWRAM ALKSRSQPAG AVESKNSRSE RKKTTTTTKR  60
SVSSIGRSMT CPGSICGTKE SAVLSRESER KNSGRNVSSS SRSLKAPDND IMSVPVVASG  120
AVVSASSSFN SETSVATTAT TVSSSSSSSS ALSSPLSSIV AGSRSFRKLS GCYYECHSVL  180
DPRTSLVGGA GMLPCSDCDE FFVKADSLEL HRATRHAVSE LGAEDTSRNV VEIIFQSSWL  240
VGKPRAAPIC RIERILKVHS SGKTVERFEQ YRERVKAIAA SSTDELARRS FPRCAADGNE  300
ILRFHCTTFT CSLGLAGATS LCRSSPQHCK LCSIIRDGFR VDGDGKIATM ATSGRAHDKT  360
QTPLSGGSGG GEKRAMLVCR VVAGRVKKLV NSSNSSEESS GDSVSSCSDL DELSVFNPLA  420
ILPCFVVMYT VATDIIT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK250862	0.0	AK250862.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100a05, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020154431.1	0.0	uncharacterized protein LOC109739792
TrEMBL	A0A3B6INM6	0.0	A0A3B6INM6_WHEAT; Uncharacterized protein
STRING	Traes_4BS_23455E24F.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	2e-69	C2H2-like zinc finger protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]