PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BS_4B1025766.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 265aa MW: 27851.7 Da PI: 9.1564

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BS_4B1025766.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.1	6.2e-36	62	115	5	58
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ Traes_4BS_4B1025766.1 62 REQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKR 115 679*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.391	63	117	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-31	63	115	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-22	64	110	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEAPLHQLAP MQQALLAHPQ NCKHDAAATM AATDMACVQQ QQQLLQLQPA AANPNTPSAA 60 AREQCPRCAS HDTKFCYYNN YNTSQPRHFC RACRRYWTLG GSLRNVPIGG STRKRLRPAP 120 QQAMRRPPVH FGAPPPPMPA QSHSQQAPQG GLLSSLFALG GAPLFEGRVG FDLGLGLPGL 180 SQVGLGGSAG EFGLHSLGLR GGHAGTSAPM LWPTAFLDNG NVDTWKVSGG GAAAMWAPEF 240 SSAPTVAQVG GNGMFHGGAQ IMGQL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374830	0.0	AK374830.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077I02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153027.1	1e-166	dof zinc finger protein DOF3.1-like
Refseq	XP_020171952.1	1e-166	dof zinc finger protein DOF3.1-like
TrEMBL	A0A3B6IL51	0.0	A0A3B6IL51_WHEAT; Uncharacterized protein
TrEMBL	A0A446RUQ5	0.0	A0A446RUQ5_TRITD; Uncharacterized protein
STRING	Traes_4BS_4B1025766.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-26	DOF zinc finger protein 1

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]