PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BS_6A0B5C129.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

TCP

Protein Properties

Length: 381aa MW: 40185.2 Da PI: 7.3556

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BS_6A0B5C129.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	137.6	1e-42	89	242	3	134
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+eWLlqqa+pai ++tgt++ +a+++ a+s + as s+ Traes_4BS_6A0B5C129.1 89 VAKRPTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETVEWLLQQAEPAIVAATGTGTVPANFStLAASLRPGAS---SRV 173 689************************************************************9999977754444444444...222 PP TCP 90 aaksaakskksqksaasalnlakesr........................akarararertrekmrikn 134 a +++ ++++q++ a++l ++ +++ a + +r+r+r++++ ++++ Traes_4BS_6A0B5C129.1 174 APFQHHLQHQPQHDVAAMLGFHGHHQhqllppppqqqhhhqhpeapqdpgAGEFMRKRYREADDLFKDT 242 222333444555555555555544333444444444444444444444449999999999999888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-36	94	237	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.325	94	148	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MDQQGAAPSS STSTSTNSSR STSDHPHHAS AAAHHHPFYY AAAAATGATP PPPFMGSLAM 60 VPAATPAGGQ TANHSQSITV AEPPSEKKVA KRPTKDRHTK VDGRGRRIRM PALCAARVFQ 120 LTRELGHKTD GETVEWLLQQ AEPAIVAATG TGTVPANFST LAASLRPGAS SRVAPFQHHL 180 QHQPQHDVAA MLGFHGHHQH QLLPPPPQQQ HHHQHPEAPQ DPGAGEFMRK RYREADDLFK 240 DTGRHQDPED GGEPAQKSRP APPPTAVSGA MWAVAPNSGA GGGGAFWMQP AWAFGAGNTV 300 QAPLQFISRS SFPGGMGDTN LGMLAGLNSC GRSTGGEQQH QQQPQQEEEE GQPPEMDQHR 360 RGSTSAGANG HDAGHSAASP Q

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MDQQGAAPSS STSTSTNSSR STSDHPHHAS AAAHHHPFYY AAAAATGATP PPPFMGSLAM  60
VPAATPAGGQ TANHSQSITV AEPPSEKKVA KRPTKDRHTK VDGRGRRIRM PALCAARVFQ  120
LTRELGHKTD GETVEWLLQQ AEPAIVAATG TGTVPANFST LAASLRPGAS SRVAPFQHHL  180
QHQPQHDVAA MLGFHGHHQH QLLPPPPQQQ HHHQHPEAPQ DPGAGEFMRK RYREADDLFK  240
DTGRHQDPED GGEPAQKSRP APPPTAVSGA MWAVAPNSGA GGGGAFWMQP AWAFGAGNTV  300
QAPLQFISRS SFPGGMGDTN LGMLAGLNSC GRSTGGEQQH QQQPQQEEEE GQPPEMDQHR  360
RGSTSAGANG HDAGHSAASP Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361002	0.0	AK361002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130G02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194047.1	0.0	transcription factor PCF3-like
Swissprot	Q53PH2	1e-100	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A3B6IPL1	0.0	A0A3B6IPL1_WHEAT; Uncharacterized protein
TrEMBL	A0A446RVU2	0.0	A0A446RVU2_TRITD; Uncharacterized protein
STRING	Traes_4BS_6A0B5C129.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	5e-52	TCP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]