PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_6BEE72C38.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 431aa    MW: 47015.9 Da    PI: 12.586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_6BEE72C38.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-05190213123
                            EEETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                            ++C+ Cg++ s + +L+ H+ + H
  Traes_4BS_6BEE72C38.1 190 FPCKVCGEVLSKPQQLELHQAMkH 213
                            89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037190218IPR007087Zinc finger, C2H2
PROSITE patternPS000280192213IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAGGARCRAL LRGFLSLFFV MFLHIGHAGC CFSPGSASQQ HEEDDAGAAS SSSSSKRRKI  60
SPLAFSPAVS SSTGVEERAG ARRRARHVSS LATSLRCYIH RIFSSAGRKN SVPGGEEQDE  120
AVTTTLSSPL AQSVTQRQAS VVLSTPSSPC ASPFLSPMSP QSLSVTPLVP CSPLATRQLS  180
RSFAARGDLF PCKVCGEVLS KPQQLELHQA MKHSLSELTH LDSSMNIIRM IFLAGWGLSP  240
PGAGDPPAVS RILRIHHNPR ALSRFEEYRD XPRRPPLRGR QRRGGGGAVH RGRQRAAAVP  300
LRHHALLPGR RRVREPLLLH LHHPPPRVCG EAGGRGRHRH LLLRVGRARV AARRGGARVR  360
VPAGAPRHAG MPRRGGTRRS RRRRRRRQGG LRLHGARAAG RRRTRGRGRR RAAGVQPPGR  420
APVLRHHVRQ L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372387RRGGTRRSRRRRRRRQ
2377384RRSRRRRR
3377385RRSRRRRRR
4378386RSRRRRRRR
5380386RRRRRRR
6400410RRRTRGRGRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2318150.0AC231815.1 Oryza minuta clone OM__Ba0073C01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153470.11e-167uncharacterized protein LOC109738783
TrEMBLA0A3B6IUB21e-178A0A3B6IUB2_WHEAT; Uncharacterized protein
TrEMBLA0A446S8J91e-178A0A446S8J9_TRITD; Uncharacterized protein
STRINGTraes_4BS_6BEE72C38.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-19C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]