PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_7579785B4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ZF-HD
Protein Properties Length: 48aa    MW: 5497.07 Da    PI: 4.8791
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_7579785B4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer521.7e-161243337
            ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegt 37
                           + +Y+eCl+NhAa+lG++a DGC+E++p+++   +
  Traes_4BS_7579785B4.1 12 REVYRECLRNHAAKLGTYASDGCCEYTPDDS---Q 43
                           578*************************843...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-121443IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-121548IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152315.3281548IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 48 aa     Download sequence    Send to blast
MEQLQHQQER AREVYRECLR NHAAKLGTYA SDGCCEYTPD DSQPAALL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0915322e-39AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBankAP0149592e-39AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-39CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168474.17e-28zinc-finger homeodomain protein 11-like
SwissprotA2XLF45e-21ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV55e-21ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A3B6INY31e-26A0A3B6INY3_WHEAT; Uncharacterized protein
TrEMBLA0A3B6U0852e-26A0A3B6U085_WHEAT; Uncharacterized protein
TrEMBLA0A446RS901e-26A0A446RS90_TRITD; Uncharacterized protein
STRINGTraes_4AL_5659286D11.13e-27(Triticum aestivum)
STRINGTraes_4BS_7579785B4.13e-28(Triticum aestivum)
STRINGTraes_4DS_F74D72DF1.15e-28(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.12e-09homeobox protein 32
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]