PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_85666ADAF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 432aa    MW: 49360.1 Da    PI: 7.1645
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_85666ADAF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.41.2e-25113208186
               trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                            +Wt ++v++Li+a ++++e+ ++++         +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++
  Traes_4BS_85666ADAF.1 113 KWTGSMVKLLITAASYTGEDPGADQggrrniaivQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVEN 200
                            7*********************987788899999**********************************************55****** PP

               trihelix  79 cpyfdqle 86 
                             +++d+++
  Traes_4BS_85666ADAF.1 201 PALLDSMH 208
                            *****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-18111234No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEGSNLPTGN MMQGIPYSSL NVHGNSMQMH ASSSGKQLFN QSQMLGSFAM PINRATARDN  60
PGFQFGEHEK KDHHQHSHYS KDSISDEEHD MTEDVTDTQN DKGKKGSAWH RMKWTGSMVK  120
LLITAASYTG EDPGADQGGR RNIAIVQKKG KWKAISKVMG ERGCSVSPQQ CEDKFNDLNK  180
RYKRLTDILG RGTACNVVEN PALLDSMHHL SDKMKEDARK ILNSKHLFYE QMCSYHNNNR  240
VNLPEDLALQ HSLQVALRCK EEHDLRRDAS ADPEEGEQSA DSDYEEHDEE HQTVHTNLRD  300
SYMNKRMCRA VDHGDVGFVT SSSNGVSGRF NPHDITLGIN NAIPGGANLS FARKDLTSQQ  360
IEFQKHRLHT QEQKLEVAKQ RLKWERFRMK KDREIERMTL ENEQMMLQQK RLELQLRHQE  420
LELELKGNAN HA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669360.0AK366936.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2048K05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174820.10.0uncharacterized protein LOC109760399
TrEMBLA0A3B6INQ40.0A0A3B6INQ4_WHEAT; Uncharacterized protein
STRINGTraes_4BS_85666ADAF.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-89sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]