PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_A6D9EB0E5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 278aa    MW: 30610.1 Da    PI: 9.7791
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_A6D9EB0E5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.22.9e-2298159259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                            dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v++++ +dp ++++tY ++H ++
  Traes_4BS_A6D9EB0E5.1  98 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKtdlKCPATKQVQQKDmSDPPLFTVTYFNHHSCN 159
                            8***************************9999********976438*************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-2386160IPR003657WRKY domain
SuperFamilySSF1182903.27E-2290160IPR003657WRKY domain
PROSITE profilePS5081116.52492161IPR003657WRKY domain
SMARTSM007744.6E-3397160IPR003657WRKY domain
PfamPF031062.5E-2498158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MLLPAPSLFN AINKASQRDR GRPQQKRRLF STAGPQNPKA SPSSLLASLL LLRPTAMALD  60
SVPSYPSDLG SSGRATRTQQ RIRKEERTWT ADTYAPYDDG HQWRKYGEKK LSNSNFPRFY  120
YRCTYKTDLK CPATKQVQQK DMSDPPLFTV TYFNHHSCNT TSRPIGSAPD TTEQSSSRRA  180
VSICFGSHAT GEQPTFLTLP GTLQSPASTT NQQSDRGAYG HQFQWTDTSP SAGDAPVKME  240
TDSLAGTDAS SGAASGHALS RTLLPIGQSR CIEYFQFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-1498158968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF3683650.0EF368365.1 Triticum aestivum WRKY transcription factor (WRKY46) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172253.11e-163WRKY transcription factor 55-like
TrEMBLA0A287NIN40.0A0A287NIN4_HORVV; Uncharacterized protein
STRINGTraes_4BS_A6D9EB0E5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-20WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]