PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_C1F4F41E9.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 284aa    MW: 30894.6 Da    PI: 7.3422
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_C1F4F41E9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.52e-4271061100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++lp  +reda++sl+yeAear+rdPvyG+v+ i+ lq +++
  Traes_4BS_C1F4F41E9.2   7 PCAACKLLRRKCTQGCVFAPYFPPDQPAKFANVHKVFGASNVSKLLNELPVAQREDAVNSLAYEAEARLRDPVYGCVAYISVLQLKIK 94 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            q+++e+a +++e
  Traes_4BS_C1F4F41E9.2  95 QVREEIANARKE 106
                            *******99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.3986107IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-427104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSSSNSPCAA CKLLRRKCTQ GCVFAPYFPP DQPAKFANVH KVFGASNVSK LLNELPVAQR  60
EDAVNSLAYE AEARLRDPVY GCVAYISVLQ LKIKQVREEI ANARKELAGY IGQAAYAPVV  120
PVQHPHAQYA AAGMGLVQPH PHPHQQMAMQ QQQPYHQQQI AEAQHLAAAV EVARAGQQQQ  180
QQHHHQHQQH EMMMMRQTYG NVHGAAAGPT VAVEPPQAAA YDGTAPFLIQ QQASPSALTY  240
RMEEPSPPPQ SSGHSHVDMS HAPQQQRHQH TDGSDEGSGG APTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-4941108114LOB family transfactor Ramosa2.1
5ly0_B8e-4941108114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3681340.0AK368134.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2068L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161127.11e-171LOB domain-containing protein 6-like
RefseqXP_020161128.11e-171LOB domain-containing protein 6-like
TrEMBLA0A3B6IL310.0A0A3B6IL31_WHEAT; Uncharacterized protein
TrEMBLA0A446RUT00.0A0A446RUT0_TRITD; Uncharacterized protein
STRINGTraes_4BS_C1F4F41E9.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.17e-61ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]