PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BS_CE839571B.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 342aa MW: 37342.4 Da PI: 10.4877

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BS_CE839571B.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.3	7.5e-29	273	329	3	58
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYeg+ n Traes_4BS_CE839571B.2 273 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGNANS 329 9***********************988**********************9775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.2E-19	224	269	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	9.7E-31	259	328	IPR003657	WRKY domain
PROSITE profile	PS50811	28.116	266	332	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-24	269	326	IPR003657	WRKY domain
SMART	SM00774	2.5E-33	271	331	IPR003657	WRKY domain
Pfam	PF03106	7.3E-24	273	326	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEEVEEANRM AVASCHRVLG LLTQTQDPAQ LRSIALGTDE ACAKFRKVVS LLGNGNEGGG 60 THPRAKLVSR RQTPGFLSQK SFLDNNTPVV VLNSAHPSTS SAQVYPRNSI LDSQPAHPIG 120 GLPKLVQPLS AHFQFGDSSR YNQFQQHQHQ QQKMRAEMFK RSNSGINLKF DSPSGTGTMS 180 SARSFMSSLS MDGSVASLDA KSSSFHLIGG PAMSDPVNAQ QAPRRRCSGR GEDGNGKCAA 240 TGRCHCSKRR KLRVKRTIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV 300 RGCPARKHVE RCVDDPSMLI VTYEGNANSP ALVDRLRCSP KL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEEVEEANRM AVASCHRVLG LLTQTQDPAQ LRSIALGTDE ACAKFRKVVS LLGNGNEGGG  60
THPRAKLVSR RQTPGFLSQK SFLDNNTPVV VLNSAHPSTS SAQVYPRNSI LDSQPAHPIG  120
GLPKLVQPLS AHFQFGDSSR YNQFQQHQHQ QQKMRAEMFK RSNSGINLKF DSPSGTGTMS  180
SARSFMSSLS MDGSVASLDA KSSSFHLIGG PAMSDPVNAQ QAPRRRCSGR GEDGNGKCAA  240
TGRCHCSKRR KLRVKRTIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV  300
RGCPARKHVE RCVDDPSMLI VTYEGNANSP ALVDRLRCSP KL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-18	264	328	7	70	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248640	0.0	AK248640.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf169m16, mRNA sequence.
GenBank	AK354776	0.0	AK354776.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011A24.
GenBank	AK375802	0.0	AK375802.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3105H03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149329.1	0.0	protein WRKY1-like isoform X2
Swissprot	Q93WU6	6e-85	WRK74_ARATH; Probable WRKY transcription factor 74
Swissprot	Q9SR07	7e-85	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A3B6IKR4	0.0	A0A3B6IKR4_WHEAT; Uncharacterized protein
TrEMBL	A0A446RTU9	0.0	A0A446RTU9_TRITD; Uncharacterized protein
STRING	Traes_4BS_CE839571B.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	7e-79	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]