PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BS_EC11C40EC.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 91aa MW: 10090.7 Da PI: 7.6793

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BS_EC11C40EC.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	71.8	1.3e-22	1	82	132	217
GRAS 132 LasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217 +a+R+ ++p+++RiTgvgs s++el+ t rLa++A lg+ fef++ +++rle ++l++L+vk gE ++ n+vl+ hrll+++ Traes_4BS_EC11C40EC.1 1 MATRTlQPPAHVRITGVGS----SRQELQDTSARLAHVAVGLGLAFEFHT-LVDRLEYVRLWMLHVKCGEHVVMNCVLAAHRLLRDE 82 6899967777*******....9**********************.6*****************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.6E-20	1	82	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	14.084	1	91	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MATRTLQPPA HVRITGVGSS RQELQDTSAR LAHVAVGLGL AFEFHTLVDR LEYVRLWMLH 60 VKCGEHVVMN CVLAAHRLLR DETGGALSDF L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269\|PubMed:19220793, ECO:0000269\|PubMed:22685166}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269\|PubMed:19220793}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158067.1	7e-47	scarecrow-like protein 28
Swissprot	Q9LWU9	7e-30	DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBL	A0A3B6TCL4	2e-45	A0A3B6TCL4_WHEAT; Uncharacterized protein
TrEMBL	A0A453QHM2	2e-45	A0A453QHM2_AEGTS; Uncharacterized protein
STRING	Traes_4BS_EC11C40EC.1	2e-60	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6404	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	1e-29	GRAS family protein

Publications ? help Back to Top
Tong H,Chu C Roles of DLT in fine modulation on brassinosteroid response in rice. Plant Signal Behav, 2009. 4(5): p. 438-9 [PMID:19816111] Li W, et al. Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice. Planta, 2010. 232(6): p. 1383-96 [PMID:20830595] Tong H, et al. DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice. Plant Cell, 2012. 24(6): p. 2562-77 [PMID:22685166] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Zhang C,Bai MY,Chong K Brassinosteroid-mediated regulation of agronomic traits in rice. Plant Cell Rep., 2014. 33(5): p. 683-96 [PMID:24667992] Yang C,Shen W,He Y,Tian Z,Li J OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice. PLoS Genet., 2016. 12(6): p. e1006118 [PMID:27332964]