PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_FE945D2FC.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 220aa    MW: 23135.1 Da    PI: 8.3074
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_FE945D2FC.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000197799123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cgk Fs+   L  H  +H
  Traes_4BS_FE945D2FC.2 77 HRCSVCGKAFSSYQALGGHKASH 99
                           79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.6E-1377101IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-47799IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.47177104IPR007087Zinc finger, C2H2
SMARTSM003550.0157799IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.22E-107799No hitNo description
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576674.22E-10136163No hitNo description
PfamPF139123.8E-14140165IPR007087Zinc finger, C2H2
SMARTSM003550.12141163IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349141163IPR007087Zinc finger, C2H2
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAVDAVRDAA AMPSPAVSEE EEGQLRCDEG WGKRRRPRRQ RQRAPSEEEH LALSLLMLAR  60
GHRDRHLLGS SEPAQEHRCS VCGKAFSSYQ ALGGHKASHR PKPAPAGADE PAATTAASPA  120
ASSSTTSSGA GAGAGGGGKV HECSVCKKTF PTGQALGGHK RCHYEGPIGA SAVASRGFDL  180
NLPAMPDIVT ERERCMPAPA DEEEVLSPLA FKKPRLMIPA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3547441e-156AK354744.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1010K21.
GenBankAK3610621e-156AK361062.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1131G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173392.11e-120zinc finger protein 1-like
SwissprotQ424304e-42ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A3B6IL201e-156A0A3B6IL20_WHEAT; Uncharacterized protein
STRINGTraes_4BS_FE945D2FC.21e-157(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.17e-32salt tolerance zinc finger
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]