PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_55503B3CD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 84aa    MW: 9614.85 Da    PI: 7.5239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_55503B3CD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.1e-123682455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           ++ ++Er RR+ +N+++  Lr+++P+      +K++Ka+i + A+ YI +Lq
  Traes_4DL_55503B3CD.1 36 KNIINERHRRRMLNEKLYALRRVVPNI-----TKMDKASIIQDAIAYIEELQ 82
                           57899*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2123281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-153484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-103584No hitNo description
PfamPF000109.2E-103682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-93883IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-133984IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MYLPAEDSLS GLYDESTSSP DGATSRSTKA SSLERKNIIN ERHRRRMLNE KLYALRRVVP  60
NITKMDKASI IQDAIAYIEE LQEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3651952e-90AK365195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031O06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177098.16e-53transcription factor bHLH35-like isoform X2
RefseqXP_020177099.16e-53transcription factor bHLH35-like isoform X3
SwissprotQ2HIV97e-25BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A3B6U2525e-53A0A3B6U252_WHEAT; Uncharacterized protein
STRINGTraes_4DL_55503B3CD.11e-54(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-27bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]