PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DL_58F3F93CA.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 241aa MW: 27097.9 Da PI: 8.4663

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DL_58F3F93CA.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.9	1.4e-16	140	230	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k +++s+v + +l lp +f++++ k ++ t+tl de+ +++e k+ ++++ l++GW +F+ ++ +++gD+ vF+l++ + Traes_4DL_58F3F93CA.1 140 FMKRMLHSHVVRGFWLGLPSHFCDTYLPK--NDCTITLVDEKDEEFESKY--LAYKKG--LSGGWAGFALDHVIRDGDSTVFQLIKPT 221 8999******************99533..4459***********..555555..9*********************9867 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v+++r+ Traes_4DL_58F3F93CA.1 222 TF--KVHIIRA 230 77..9999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.9E-19	131	230	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.67E-22	133	229	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.07E-25	138	229	No hit	No description
SMART	SM01019	3.7E-16	140	231	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.321	140	231	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.5E-15	140	230	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MAIEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAP KTPSPMKHKR RRIIEAATPV 60 PSPPRRSRRL AHIPEVKYAD ACAEVGEDSE RVGRWSPRRR SGSIYLAGGG GGPISMKARM 120 EAASKAEELE SQLDPEFPSF MKRMLHSHVV RGFWLGLPSH FCDTYLPKND CTITLVDEKD 180 EEFESKYLAY KKGLSGGWAG FALDHVIRDG DSTVFQLIKP TTFKVHIIRA AVGDDDNEEM 240 E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	52	KRRRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249804	0.0	AK249804.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54k19, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149937.1	1e-179	B3 domain-containing protein Os03g0184500-like
Swissprot	Q10QS9	1e-122	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A3B6JMZ4	1e-178	A0A3B6JMZ4_WHEAT; Uncharacterized protein
STRING	Traes_4DL_58F3F93CA.1	1e-179	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-47	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]