PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_5B3B57371.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 254aa    MW: 26998 Da    PI: 4.4813
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_5B3B57371.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS113.72.3e-351182541128
                   GRAS   1 lvelLlecAeavss..gdlelaqalLarlsel.aspdgd....pmqRlaayfteALaarlar..svselykalppsetseknsseela 79 
                            l +lL+++Aea+s   ++ ela+ +L rl+e+ +s +g+    +m+Rlaa+ft AL+  l +  sv +++++ ++ +++++++ ++l+
  Traes_4DL_5B3B57371.1 118 LLHLLMAAAEALSGphKSRELARVILVRLKEMvSSTSGNagasNMERLAAHFTDALQGLLDGshSVAGTSRQAAMAASHHHSTGDVLT 205
                            579**********8557777************555555566669****************99556677888888888888889***** PP

                   GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaL 128
                            a+++++++sP++kf+h+taNqaIleav+g++rvHi+D+d+ +G+QW++L
  Traes_4DL_5B3B57371.1 206 AFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHIVDYDLAEGIQWASL 254
                            ***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.86192254IPR005202Transcription factor GRAS
PfamPF035148.1E-33118254IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEDVVGDLEI SGYSSISTSP SSSLDDGMGL YGWNALSPVA DWGLFCSDDG GHDLHGLIES  60
MLCDDALIGK PDEHPTMFTD GPCYSNASDP SSTTTTNPGT PVQHDDTPDC NPEKGLRLLH  120
LLMAAAEALS GPHKSRELAR VILVRLKEMV SSTSGNAGAS NMERLAAHFT DALQGLLDGS  180
HSVAGTSRQA AMAASHHHST GDVLTAFQML QDMSPYMKFG HFTANQAILE AVAGDRRVHI  240
VDYDLAEGIQ WASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-1416325441127GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352061e-141AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence.
GenBankAP0149591e-141AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151677.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A3B6JJ260.0A0A3B6JJ26_WHEAT; Uncharacterized protein
TrEMBLA0A481S1C60.0A0A481S1C6_WHEAT; Nodulation-signaling pathway 2 protein (Fragment)
STRINGTraes_4DL_5B3B57371.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-36GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]