PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_5BB7F31ED.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 615aa    MW: 65655.8 Da    PI: 5.9429
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_5BB7F31ED.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.44.9e-083864231954
                            HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            Fe   ++yp+ +e+  LA++ gL+  qV++WF N R +
  Traes_4DL_5BB7F31ED.1 386 FEHflHPYPKDSEKVMLARQAGLSRGQVSNWFINARVR 423
                            554459******************************88 PP
2BELL1153.9e-37248319172
                   BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            erq+lq+k + L+ +l++Vd+rY++y++q+q+v+ssF+avag g+akpYt+lAl++iSrhFr+L+dai  q+
  Traes_4DL_5BB7F31ED.1 248 ERQDLQNKVTALMAMLDQVDRRYRHYHQQMQMVVSSFDAVAGSGAAKPYTALALQTISRHFRSLRDAIGAQV 319
                            799*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.3E-47157317IPR006563POX domain
PfamPF075262.4E-48163315IPR006563POX domain
PROSITE profilePS5007111.839364427IPR001356Homeobox domain
CDDcd000863.32E-11367428No hitNo description
SMARTSM003896.2E-8367431IPR001356Homeobox domain
SuperFamilySSF466893.21E-16368434IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-26370433IPR009057Homeodomain-like
PfamPF059202.7E-16384423IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MATFFSTSND QRGLAGGGGG GGDMSFHHHY PMSNQYPDSS TGGLIPLPAS ILQQSHIAHG  60
GGGDGRDDXG RDDEPAAFMN SRDSAELGGL QTQMLMGDGG ASAGQRTHQG GLSLSLGSQV  120
PVSLYQYGRP GGMAAAASPT LMSPNQSAMA MAASRNAQVN VYVQNSRFLK AARELLDEVV  180
SVRDAIKRKG DRKDDSAGNG ECGKVEGDKG EENEGSSAAE LXGTTVLSTL GKGEENEGSS  240
AAELSPAERQ DLQNKVTALM AMLDQVDRRY RHYHQQMQMV VSSFDAVAGS GAAKPYTALA  300
LQTISRHFRS LRDAIGAQVQ SARRSLGEPQ DGSGAGGLSR LRYIDQHLRQ QRAMQQFGMM  360
QQPQHAWRPQ RGLPESAVSV LRAWLFEHFL HPYPKDSEKV MLARQAGLSR GQVSNWFINA  420
RVRLWKPMVE EMYKEEFGAE MDSTNSSSEN AGNKHGKVDE AACSEDQDRD EFQSTSTHAG  480
ASQLLNAYKS EPVGSMDAGP LSSLGGGDMG TYAPAGLSLN HHGPGGGSLL QDAFAHHGDD  540
ARFVPYGGNM GDLSGSVSLT LGLQHCNNNN NAGHVPPEQQ GLLYGNPGDF DFLNGADDRQ  600
RFASSSSQLL HDFVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A1e-16373431159Homeobox protein Meis2
5bng_B1e-16373431159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675790.0AK367579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165933.10.0BEL1-like homeodomain protein 7
TrEMBLA0A3B6JM900.0A0A3B6JM90_WHEAT; Uncharacterized protein
STRINGTraes_4DL_5BB7F31ED.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-117BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]